
Caliby
Ensemble-conditioned sequence design and sidechain packing
Caliby performs structure- and ensemble-conditioned protein sequence design with integrated scoring and sidechain packing. Conditioning on conformational ensembles produces sequences robust to target flexibility rather than fitted to a single state. Improves design success on dynamic proteins and multi-state targets.
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At a glance
- Input
- Structure ensemble (PDB)
- Output
- Designed sequences (FASTA)
- Developed by
- Stanford University
- Published
- Shuai et al., 2025 · 2025
#sequence-design#ensembles#sidechain-packing
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