The platform

Everything you need to take ideas to results

MolPilot combines a curated library of 83+ models, browser-native analysis, cloud execution, and automation into a single scientific computing workspace.

Curated tool library

Access 83+ published, peer-reviewed models with proven research track records — from AlphaFold3 and RFdiffusion to GROMACS — each wrapped with sane defaults and full parameter control.

Cloud GPU compute

Heavy models run on managed GPUs in isolated containers. No servers, queues, CUDA drivers, or dependency hell — submit a job and get results.

Interactive visualization

Inspect folding, docking, and design outputs directly in your browser with an embedded 3D viewer. Rotate, measure, and share views with a link.

Pipelines & automation

Chain tools together so outputs flow downstream automatically: fold → redesign → re-fold → score. See the total credit cost before anything runs.

API access

Submit jobs, stream results, and integrate MolPilot into your own pipelines and notebooks with a clean REST API and client libraries.

Organized workspace

Uploads, job outputs, collections, and projects live in one searchable library. Send any file straight into the next tool with one click.

How it works

From tool selection to analyzed results in four steps

No local installs, no command line, no DevOps. The platform handles the boring parts so you can focus on the biology.

Choose a tool

Browse the curated library, filter by category, and open the method that fits your question.

Configure & upload

Drop in your sequence, structure, or ligand. Tune parameters or keep the science-backed defaults.

Cloud runs it

Jobs execute on managed GPUs in isolated containers — no queues to babysit, no drivers to install.

Analyze & export

Inspect results in the 3D viewer, send them to the next tool, or download everything in standard formats.

Security & privacy

Built for confidential research

Whether you're in academia or pharma, your data deserves enterprise-grade protection — without enterprise-grade friction.

Private by default

Your sequences, structures, and results are never used to train models and are never shared with third parties. Only you and your team can see them.

Your IP stays yours

Everything you generate on MolPilot belongs to you — no royalties, no equity, no claims on your discoveries. Full ownership, period.

Encrypted end to end

Data is encrypted in transit and at rest. Jobs run in isolated, single-tenant containers that are destroyed after execution.

Isolated execution

Every job runs in a fresh, sandboxed environment. Compute is never shared across accounts, and logs are scrubbed of inputs.

Need a security review, DPA, or custom deployment? Talk to our team.

peer-reviewed tools: 83
research categories: 8
free credits on signup: 200
infrastructure to manage: 0

Start folding in minutes, not weeks

Create a free account, get 200 credits, and run your first structure prediction today. No installs, no GPU budget, no paperwork.

Free tier includes 200 credits · No credit card required · Cancel anytime