
PDBFixer
Repair structures: add missing atoms and residues
PDBFixer repairs protein structures for simulation and modeling by adding missing atoms, residues, hydrogens, disulfides and solvent, and by converting common non-standard residues. It wraps OpenMM data structures for direct downstream use. A prerequisite step before energy minimization and docking.
PDBFixer is being onboarded — request access and be first in line.
At a glance
- Input
- Structure (PDB)
- Output
- Repaired structure (PDB)
- Developed by
- Stanford / Pande Lab
- Published
- Pande Lab, 2017 · 2017
#repair#preparation#simulation
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