
gmx_MMPBSA
MM/PBSA binding free energies for GROMACS trajectories
gmx_MMPBSA computes MM/PBSA and MM/GBSA binding free energies directly from GROMACS trajectories, automating solvation, entropy and per-residue decomposition calculations. It ingests production MD runs of complexes. A standard step for ranking ligands or mutations without alchemical simulations.
gmx_MMPBSA is being onboarded — request access and be first in line.
At a glance
- Input
- GROMACS trajectories (XTC)
- Output
- Binding free energies (CSV)
- Developed by
- University of Havana
- Published
- Valdes-Tresanco et al., 2021 · 2021
#free-energy#mmpbsa#trajectories
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