Molecular render representing gmx_MMPBSA

gmx_MMPBSA

MM/PBSA binding free energies for GROMACS trajectories

gmx_MMPBSA computes MM/PBSA and MM/GBSA binding free energies directly from GROMACS trajectories, automating solvation, entropy and per-residue decomposition calculations. It ingests production MD runs of complexes. A standard step for ranking ligands or mutations without alchemical simulations.

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At a glance

Input
GROMACS trajectories (XTC)
Output
Binding free energies (CSV)
Developed by
University of Havana
Published
Valdes-Tresanco et al., 2021 · 2021
#free-energy#mmpbsa#trajectories