Molecular render representing PocketXMol

PocketXMol

Pocket-conditioned generation across molecule classes

PocketXMol generates drug-like molecules, peptides and docking poses inside protein binding pockets through a unified model that represents all species as atomic interaction graphs. One framework covers ligand design across molecule classes. Returns 3D structures and poses for downstream scoring.

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At a glance

Input
Protein pocket (PDB)
Output
Molecules with poses (SDF)
Developed by
Tsinghua University
Published
Peng et al., 2024 · 2024
#structure-based-design#molecule-generation#pockets