LightDock
Swarm-optimization docking for protein complexes
LightDock docks protein-protein and protein-peptide complexes using a swarm intelligence optimizer that can incorporate membrane restraints and residue flexibility. Each glowworm swarm explores the binding landscape independently, enabling parallelizable searches. Supports user-defined restraints to bias known interface residues.
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At a glance
- Input
- Protein structures (PDB)
- Output
- Docked complexes (PDB)
- Developed by
- Barcelona Supercomputer Center
- Published
- Jimenez-Garcia et al., Bioinformatics 2018 · 2018
#docking#swarm#protein-complexes
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