AlphaFold3

Model proteins with ligands, DNA, RNA and modifications

Extends deep-learning structure prediction beyond proteins to joint complexes with small molecules, nucleic acids, ions and post-translational modifications. Given sequences and optional ligand descriptions, its generative diffusion module produces highly accurate all-atom models. Widely used to pose ligands and study molecular machinery in one run.

AlphaFold3 is live on MolPilot — paste a sequence and press Fold.